Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLNAKGESNQILVDKEVHSTNLLLDIDEKPELFQGLLLSFQHVFAMFGATILVPLILGMPVSVALFASGCGTLIYQVATKFKVPVYLGSSFAYITAMALAMKQMHGDISAAQTGILFVGLIYVVVATVIKFVGNSWVDKILPPIIIGPMIIVIGLGLANSAVTNAGFVAKGDWRKMLVAVVTFLIAAFINTKGKGFIKIIPFLFAIIGGYILSIILGLVDLSPVEKAAWFELPKFYLPFKTGLFHSYKLYFGPEMLAI------LPISIVTIAENIGDHTVLGQI-CGRNFLKKPGLNRLLIGDGLATAFSALIGGPAETTYGENTGVIGMTRIASVTVIRNAAFIAIAFSFFGKFTALISTIPSAVLGGMAILLYGVIASNGLKVLIENRVNFAEVRNLIIASSMLVLGLGGAVLDLGALTLSGTALSAIVGIILNLILPKESMKS |
| 3PND Chain:A ((13-329)) | --------AAQVLEGKTMGTLWRVSVVGIDAKRAAELQTKIQTQLDADDWLLSTY-------------KNDSALMRFNHSRSLAPWPVSEAMADIVTSALRIGAKTDGA---------------------------------MDITVGPLVNLWGFGPDRQPLHIPT---PAQIDAAKAKTGLQHLQVIDRAGHQFLQKDLPDLY--------------VDLSTVGEGYAADHLARLMEQEG--IARYLVSVGGALSSRGMNAQGQPWRVAIQKPTDRENAVQAIVDINGHGISTSGSYRNYYELD---------GKRVSHVIDPQTGRPIEHNLVSVTVIA-------------------PTALEADGWDTGLMVLG----------TQKAQEVVRREGL---AVFMIMKEGEGFKTWMSPQFKTFLVSD----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -237937 for 2569 contacts (-92.6/contact) +
2D Compatibility (PS) -33115 + (NN) -5349 + (LL) 12964
1D Compatibility (HY) -1600 + (ID) 2200
Total energy: -267237.0 ( -104.02 by residue)
QMean score : 0.264
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