Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVKVQTGGKLYIAGEYAILYPGQVAILKNIPIYMTALATFADNYSLY--SDMFNYT-------------ASL-QPDKQYSLIQETIL-----------LMEEWLINFGKNIKPIHLEITGKLERYGLKFGIGSSGSVVVLTIKAMAALYEI---------------EMPSDLLFKLSAYVLLKRGDNGSMGDIACIAYEHLISYSAFDRRAVSKMIETKPLEQVLEAEWGYRITKIQASLEMDFLVGWTMQPSISKEMINIVKSTI------TQRFLDDTNYQVVQLLSAF-------KEGDKEAIKRCLEEISLLLFNLHPSIYTDKLQKLKEASKGLDIVTKSSGSGGGDCGIAISFNKNDN---QTLIKRWESAGIELLSKETLS |
| 1KVK Chain:A ((5-371)) | VLLVSAPGKVILHGEHA-VVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDT---EKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQ-RTLPSLDIMVWSELPPG---AGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMS----SLK--------------------RLPALQILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALG--VGHASLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -198148 for 2361 contacts (-83.9/contact) +
2D Compatibility (PS) -31343 + (NN) -12024 + (LL) 2512
1D Compatibility (HY) -7600 + (ID) 2350
Total energy: -248953.0 ( -105.44 by residue)
QMean score : 0.385
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