Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIIGLTGGIASGKSTVTKIIRESGFKVIDADQVVHKLQAKGGKLYQALLEWLGPEILDADGELDRPKLSQMIFANPDNMKTSARLQNSIIRQELACQRDQLKQTEEIFFVDIPLLIEEKYIKWFDEIWLVFVDKEKQLQRLMARNNYSREEAELRLSHQMPLTDKKSFASLIINNNGDLITLKEQILDALQRL
1VIY Chain:C ((6-179))
---IVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQ--IQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAHY
General information:
TITO was launched using:
RESULT:
Template:
1VIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60351 for 1256 contacts (-48.1/contact) +
2D Compatibility (PS) -19155 + (NN) -9596 + (LL) 348
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -102604.0 ( -81.69 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_1VIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIY-query.scw
PDB file :
Tito_Scwrl_1VIY.pdb
: