Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKILAACGAGVNSSHQIKDAIETQLGDRGYNVHCDAVMVKDITEEMVNKYDIFTPIAKTDLG--------FNVPIPVVEAGP--ILYR-IPVMSEPVFTALEQVIKEHNLS
3NBM Chain:A ((6-107))
ELKVLVLCAGSGTSA-QLANAINEGANLTEVRVIANSGAYGAHYD-IMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKS--PSKALQFVLEHYQ-----
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63946 for 686 contacts (-93.2/contact) +
2D Compatibility (PS) -9657 + (NN) 798 + (LL) 856
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -76149.0 ( -111.00 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: