Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMFGTIFNTVMIIAGS-IIGGIFKKGIKD------EYQDILMQAMGFAAVALGINAITQHLPDSKYPILFIVS-------------------------LAIGGLLGQIINL-ELRFNKLVNKFSKSNLAEGLSTAVLLFCI-----GSLSIL---GPVEAALHG-DYTYLLTNGMLDGITSIVLAST-----------FGFGIAA-AALVLFSWQG----SIYLFAQVMESAINTDLINEITIVGGILILSSGLSIL-GIK-KFKTLNLLPSL-------L-IPPVVIFVIHAFGLRF--------------
4DVG Chain:B ((8-312))--EVVQQKFAIVAKEMKIDNPELITIPNQWKLVQEYEKKQKKDIRIQLNAQKTGNWRNAITDPKYLADLLKTRDDMDLLNEMVVVFRSSSVSFIKTFVSVGGLA----NLMAIYKKKIEAENSNTAIDEERKCCEVLRYVFAEEDATVALIEIDGGVELLLKGMNSKRITPDNQLDILLEITLTSSMVEHPSQEGLYLGGDVCVMNAFSNLVSEGVDMKKFLSFFSLFSKSKSEKFKHASLVLINNLIDQPELEHRMDVRNSFIEIGLVNELENMKNTEWMKIDKIKDSINDFFDSWEEDKKEVESRFDDL


General information:
TITO was launched using:
RESULT:

Template: 4DVG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 719 -112188 -156.03 -503.08
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain B : 0.63

3D Compatibility (PKB) : -156.03
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.149

(partial model without unconserved sides chains):
PDB file : Tito_4DVG.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4DVG-query.scw
PDB file : Tito_Scwrl_4DVG.pdb: