Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSPYILVLYYSRHGATAEMARQIARGV-EQGGFEARVRTVPAVSTECEAVAPDIPAEGAL-YATLEDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGIPYSEPAL--LETRGGGTPYGASHFAGADGKRSLDEHELTLCRALGKRLAETAGKLGS
4LAF Chain:D ((5-205))
-----IQIVFYSSYGHIYKMAEAIAAGAREVGDVEVTLLQVPEL-------------FGSIPYATPEVLAEADAIIFGTPTRFGNMCSQMRNFLDQTGGLWMSGGLIGKVGSVFTSTASQHGGQETTITSFHTTLLHHGMVIVGVPYSEPGLTNMTEISGGTPYGASTLAGADGSRQPSENELQIARFQGKHVATIAKRLAN
General information:
TITO was launched using:
RESULT:
Template:
4LAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96264 for 1549 contacts (-62.1/contact) +
2D Compatibility (PS) -19537 + (NN) -12255 + (LL) 864
1D Compatibility (HY) -13200 + (ID) 4500
Total energy: -144892.0 ( -93.54 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_4LAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LAF-query.scw
PDB file :
Tito_Scwrl_4LAF.pdb
: