Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEQIGNGVALVTGASSGIGATYAEHLARRGHDLLLVARDRQRLEALADRLRQAHGVRVEILRADLSERDDRLRVERRLRDDASIALLVNNAGVAMNGPLADADMDRAERMIALNVVALTRLAAGAAEGFRRRGGGAIVNLGSVVALAPELFNAVYSATKAYVLSLSQSLQHELAGSGVYVQAVLPGVTRTEIWERSGTGIAGIPAEMVMEVEDLVEAALVGFDRREAVTIPSLPDAADWQALMTARARLAPNLSRQRPAERYLG
4BMV Chain:H ((8-258))
----------LITGASSGIGATYAERFARRGHDLVLVARDKVRLDALAARLRDESGVAVEALQADLTRPADLAAVEIRLREDARIGILINNAGMAQSGGFVQQTAEGIERLITLNTTALTRLAAAVAPRFVQSGTGAIVNIGSVVGFAPEFGMSIYGATKAFVLFLSQGLNLELSPSGIYVQAVLPAATRTEIWGRAGIDVNTLPE--VMEVDELVDAALVGFDRRELVTIPPLHVAARWDALDGARQGLMSDIRQAQAADRY--
General information:
TITO was launched using:
RESULT:
Template:
4BMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157456 for 1982 contacts (-79.4/contact) +
2D Compatibility (PS) -27628 + (NN) -16642 + (LL) 784
1D Compatibility (HY) -24400 + (ID) 7400
Total energy: -232742.0 ( -117.43 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_4BMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BMV-query.scw
PDB file :
Tito_Scwrl_4BMV.pdb
: