Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDILKDKIRSEGIVLSEHVLKVDAFLNHQIDPQLMQQVGHAFATRFRDQGITKIVTIEASGIAPAVMAGLELGVPVIFARKYQSLTLKDNLYISKVFSFTKQTESTIAISAKHLNAHDHVLVIDDFLANGHAAKALIDLIGQAGASIAGLGIVIEKSFQDGRALLESEGYRVESLARVKSLAGGQVEFLD
1Y0B Chain:A ((4-192))
MEALKRKIEEEGVVLSDQVLKVDSFLNHQIDPLLMQRIGDEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEKSFQPGRDELVKLGYRVESLARIQSLEEGKVSFV-
General information:
TITO was launched using:
RESULT:
Template:
1Y0B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151453 for 1545 contacts (-98.0/contact) +
2D Compatibility (PS) -20416 + (NN) -3783 + (LL) -76
1D Compatibility (HY) -24400 + (ID) 6450
Total energy: -206578.0 ( -133.71 by residue)
QMean score : 0.695
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0B-query.scw
PDB file :
Tito_Scwrl_1Y0B.pdb
: