Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
4DBK Chain:A ((1-124))
----------------------ALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC--
General information:
TITO was launched using:
RESULT:
Template:
4DBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71225 for 910 contacts (-78.3/contact) +
2D Compatibility (PS) -13389 + (NN) -10814 + (LL) 2308
1D Compatibility (HY) -17200 + (ID) 5050
Total energy: -115370.0 ( -126.78 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_4DBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DBK-query.scw
PDB file :
Tito_Scwrl_4DBK.pdb
: