Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
4ITR Chain:C ((3-178))
--TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE-------------
General information:
TITO was launched using:
RESULT:
Template:
4ITR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139669 for 1425 contacts (-98.0/contact) +
2D Compatibility (PS) -18938 + (NN) -9142 + (LL) 912
1D Compatibility (HY) -26000 + (ID) 8800
Total energy: -201637.0 ( -141.50 by residue)
QMean score : 0.718
(partial model without unconserved sides chains):
PDB file :
Tito_4ITR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ITR-query.scw
PDB file :
Tito_Scwrl_4ITR.pdb
: