Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4M1T Chain:B ((2-169))
MTEYKLVVVGACGVGKSALTIQLIQNHFVDE------DSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKE---------------------
General information:
TITO was launched using:
RESULT:
Template:
4M1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108958 for 1301 contacts (-83.7/contact) +
2D Compatibility (PS) -17779 + (NN) -6022 + (LL) 1932
1D Compatibility (HY) -20000 + (ID) 7600
Total energy: -158427.0 ( -121.77 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_4M1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M1T-query.scw
PDB file :
Tito_Scwrl_4M1T.pdb
: