Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM
4M1T Chain:B ((2-169))
MTEYKLVVVGACGVGKSALTIQLIQNHFVDE------DSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKE---------------------
General information:
TITO was launched using:
RESULT:
Template:
4M1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110643 for 1301 contacts (-85.0/contact) +
2D Compatibility (PS) -17895 + (NN) -7428 + (LL) 856
1D Compatibility (HY) -19600 + (ID) 7200
Total energy: -161910.0 ( -124.45 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_4M1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M1T-query.scw
PDB file :
Tito_Scwrl_4M1T.pdb
: