Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPPLRNEFQYFQRMTTVSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPKGAHFLAKSLDDALELIEDPELTNKVDVVWIVGGSSVYKEAMNKPGHVRLFVTRIMQEFESDAFFPEIDFEKYKLLPEYPGVPLDVQEEKGIKYKFEVYEKNN
4M6J Chain:A ((4-187))
---SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND
General information:
TITO was launched using:
RESULT:
Template:
4M6J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109085 for 1363 contacts (-80.0/contact) +
2D Compatibility (PS) -20149 + (NN) -12856 + (LL) 500
1D Compatibility (HY) -24800 + (ID) 8050
Total energy: -174440.0 ( -127.98 by residue)
QMean score : 0.701
(partial model without unconserved sides chains):
PDB file :
Tito_4M6J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M6J-query.scw
PDB file :
Tito_Scwrl_4M6J.pdb
: