Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
1DR6 Chain:A ((1-186))
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSV---
General information:
TITO was launched using:
RESULT:
Template:
1DR6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123672 for 1398 contacts (-88.5/contact) +
2D Compatibility (PS) -20502 + (NN) -10273 + (LL) 440
1D Compatibility (HY) -26800 + (ID) 9250
Total energy: -190057.0 ( -135.95 by residue)
QMean score : 0.786
(partial model without unconserved sides chains):
PDB file :
Tito_1DR6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DR6-query.scw
PDB file :
Tito_Scwrl_1DR6.pdb
: