Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
3TD8 Chain:A ((5-206))
----KSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRN--------IHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
General information:
TITO was launched using:
RESULT:
Template:
3TD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149882 for 1467 contacts (-102.2/contact) +
2D Compatibility (PS) -20848 + (NN) -8487 + (LL) 296
1D Compatibility (HY) -30000 + (ID) 9700
Total energy: -218621.0 ( -149.03 by residue)
QMean score : 0.689
(partial model without unconserved sides chains):
PDB file :
Tito_3TD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TD8-query.scw
PDB file :
Tito_Scwrl_3TD8.pdb
: