Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
2XPB Chain:A ((11-167))
------LPPGWEKAMSRSSGRVYYFNHITNASQWERPSG-----------EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
General information:
TITO was launched using:
RESULT:
Template:
2XPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30260 for 1103 contacts (-27.4/contact) +
2D Compatibility (PS) -15772 + (NN) -10515 + (LL) -200
1D Compatibility (HY) -15600 + (ID) 7250
Total energy: -79597.0 ( -72.16 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_2XPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XPB-query.scw
PDB file :
Tito_Scwrl_2XPB.pdb
: