Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAVSSDRNFPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRTT
3CM7 Chain:A ((28-128))
--------------TNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVR--
General information:
TITO was launched using:
RESULT:
Template:
3CM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24871 for 686 contacts (-36.3/contact) +
2D Compatibility (PS) -11089 + (NN) -6184 + (LL) 316
1D Compatibility (HY) -14000 + (ID) 5050
Total energy: -60878.0 ( -88.74 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3CM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CM7-query.scw
PDB file :
Tito_Scwrl_3CM7.pdb
: