Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLAAVSLGLLLLALLLLLRHLGWGLVTIFWFEYVLQPVHNLIMGDTKEQRILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQGPSSPDKS
3BWM Chain:A ((1-214))
--------------------------------------------GDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGP------
General information:
TITO was launched using:
RESULT:
Template:
3BWM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146344 for 1844 contacts (-79.4/contact) +
2D Compatibility (PS) -23294 + (NN) -9726 + (LL) 4656
1D Compatibility (HY) -29600 + (ID) 8700
Total energy: -213008.0 ( -115.51 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_3BWM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BWM-query.scw
PDB file :
Tito_Scwrl_3BWM.pdb
: