Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRFCPSPSTSSEGTRIKKISIEGNIAAGKSTFVNILKQASEDWEVVPEPVARWCNVQSTQEEFEELTTSQKSGGNVLQMMYEKPERWSFTFQSYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESDCMNETEWTIYQDWHDWMNSQFGQSLELDGIIYLRATPEKCLNRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTSFDYLQEVPVLTLDVNEDFKDKHESLVEKVKEFLSTL
2QRO Chain:B ((40-280))
-------------------RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQS-------------NGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
2QRO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104956 for 1778 contacts (-59.0/contact) +
2D Compatibility (PS) -23909 + (NN) -6878 + (LL) 1276
1D Compatibility (HY) -34400 + (ID) 10800
Total energy: -179667.0 ( -101.05 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_2QRO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QRO-query.scw
PDB file :
Tito_Scwrl_2QRO.pdb
: