Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAASGEQAPCSVYFCGSIRGGREDQALYARIVSRLRRYGKVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAYLPQKTASSSHPSA
4FYI Chain:C ((4-142))
----------SVYFCGSIRGGREDQALYARIVSRLRRYGKVLTE----------------GDQFIHEQNLNWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEA--------------
General information:
TITO was launched using:
RESULT:
Template:
4FYI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83564 for 916 contacts (-91.2/contact) +
2D Compatibility (PS) -13694 + (NN) -9156 + (LL) 2044
1D Compatibility (HY) -18400 + (ID) 6100
Total energy: -128870.0 ( -140.69 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_4FYI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FYI-query.scw
PDB file :
Tito_Scwrl_4FYI.pdb
: