Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MANSTGLNASEVAGSLGLILAAVVEVGALLGNGALLVVVLRTPGLRD--ALYLAHLCVVDLLAAASIMPLGLLAAPPPGLGRVRLGPAPCRAARFLSAALLPACTLGVAALGLARYRLIVHPLRPGSRPPPVL---VLTAVWAAAGLLGALSLLGTPPAPPPAPARCSVLAG---GLGPFRPLWALLAFALPALLLLGAYGGIFVVARRAALRPPRPARGSRLHSD----------------------------------------------------------------------------------------------------------SL-----------------------------DSRLSILPPLRPRLPGGKAALAPALAVGQFAACWLPYGCACLAPAA--------------RAAEAEAAVTWVAYSAFAAHPFLYGLLQRPVRLALGRLSRRALPGPVRACTPQAWHPRALLQCLQRPPEGPAVGPSEAPEQTPELAGGRSPAYQGPPESSLS |
3ODU Chain:A ((43-498)) | --------NANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV-ITLPFWAVDAV----ANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ---------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -183687 for 2081 contacts (-88.3/contact) +
2D Compatibility (PS) -31002 + (NN) -5071 + (LL) 1756
1D Compatibility (HY) -17200 + (ID) 2750
Total energy: -237954.0 ( -114.35 by residue)
QMean score : 0.210
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