Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASSTTRGPRVSDLFSGLPPAVTTPANQSAEASAGNGSVAGADAPAVTPFQSLQLVHQLKGLIVLLYSVVVVVGLVGNCLLVLVIARVRRLHNVTNFLIGNLALSDVLMCTACVPLTLA-YAFEPRGWVFGGGLCHLVFFLQPVTVYVSVFTLTTIAVDRYVVLVHPLRRRISLRLSAYAVL---AIWALSAVLALPAAVHTYHVELKPHD--VRLCEEFWGSQERQRQLYAWGLLLVTYLLPLLVILLSYVRVSVKLRNRVVPGCVTQSQADWDRARRRRTFCLLVVIVVVFAVCWLPLHVFNL---LRDLDPHAIDPYAFGLVQLLCHWLAMSSACYNPFIYAWLHDSFREELRKLLVAWPRKIAPHGQNMTVSVVI |
| 4RWD Chain:B ((125-405)) | --------------------------------------------------------------ITALYSAVCAVGLLGNVLVMFGIVRYTKMKTATNIYIFNLALADAL-ATSTLPFQSAKYLMET--WPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPV-KALDFRTPAKAKLINICIWVLASGVGVPIMVMAVT---RPRDGAVVCMLQFPSPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVR----LLSGSKEKDRSLRRITR-MVLVVVGAFVVCWAPIHIFVIVWTLVDIDRR--DPLVVAALH-LCIALGYANSSLNPVLYAFLDENFKRCFRQL--------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4RWD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -264103 for 2058 contacts (-128.3/contact) +
2D Compatibility (PS) -28012 + (NN) -9563 + (LL) 5720
1D Compatibility (HY) -31600 + (ID) 4700
Total energy: -332258.0 ( -161.45 by residue)
QMean score : 0.303
|
|
|