Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSCGQVDSKLAPCVSYVTGKA---P------------SISKECCSGVQGLNGLARSSPDRKIACRCLKSLATSIK--S-I-------NMDKVSGVPGKCGVSVPFPISMSTNCNNVN
1SM7 Chain:A ((13-101))
-------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47216 for 433 contacts (-109.0/contact) +
2D Compatibility (PS) -6264 + (NN) -336 + (LL) 568
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -57548.0 ( -132.91 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: