Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ALSCSTVYNTLMPCLGYVQSGGVVPRACCGGIKKLVSTARSTPDRRSICTCLKNVGSGAAG---GPY-----VSRAAGLPGKCKVPLPFNCNSN
3OB4 Chain:A ((427-486))
-----------------------HQERCCNELNEFE------NNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQ-----
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19179 for 274 contacts (-70.0/contact) +
2D Compatibility (PS) -5184 + (NN) -1504 + (LL) 1236
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -26731.0 ( -97.56 by residue)
QMean score : 0.216
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: