Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGDVDASLLPCVAYLTGKAAAPSGDCCAGVRHLRTLPVGTAERRFACDCV--KKA-AARFKGLNGDAIRDLPAKCAAPLPFPLSLDFDCNTIP
1N89 Chain:A ((4-65))
-------ASQLAVCASAILSG-AKPSGECCGNLRA-----------QQGCFCQYAKDPTYGQ--YIRSPHARDTLTSCGLAVP-------------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17329 for 366 contacts (-47.3/contact) +
2D Compatibility (PS) -5939 + (NN) -1066 + (LL) 1900
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -24834.0 ( -67.85 by residue)
QMean score : 0.139
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: