Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------------------------------------ATACDATQLTPCAGAIIIGRSPSAACCSRLKEQQPCLCTYARDPNLQRYVNSPNGKKAMAACKVPVPSC-----------------------
2YVQ Chain:A ((5-1478))
SSGHTAFLKAMLSTGFKIPQKGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNA--------NNVPATPVAWPSQELSSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTNFQVTKLFAEAVQ
General information:
TITO was launched using:
RESULT:
Template:
2YVQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14973 for 355 contacts (-42.2/contact) +
2D Compatibility (PS) -6188 + (NN) -1093 + (LL) 612
1D Compatibility (HY) -1200 + (ID) 450
Total energy: -23292.0 ( -65.61 by residue)
QMean score : 0.136
(partial model without unconserved sides chains):
PDB file :
Tito_2YVQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YVQ-query.scw
PDB file :
Tito_Scwrl_2YVQ.pdb
: