Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQPSCAAQLT--QLAPCARVGVA----PAPGQ-PLPA-----------PPAECCSALGAVSHDCACGTLDI----------------------INSLPAKCGLPRVTCQ
1PSY Chain:A ((15-116))
-SQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24668 for 408 contacts (-60.5/contact) +
2D Compatibility (PS) -6279 + (NN) -3875 + (LL) 500
1D Compatibility (HY) -6000 + (ID) 650
Total energy: -40972.0 ( -100.42 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: