Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSICDMDINDMQKCRPAIT----G-NNPPPPVNDCCVVVRKANFECLCRFKF--------YLPILR---------IDPSKVVALVAKCGVTTVPRSCQV
1HSS Chain:A ((12-105))
-----FQVPALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHISEWCRCGALYSMLDSMYKEH----GAFPRCRREVVKLTAASITAVCRLPIVV-----
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34087 for 370 contacts (-92.1/contact) +
2D Compatibility (PS) -6040 + (NN) 2230 + (LL) 1144
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -40203.0 ( -108.66 by residue)
QMean score : 0.263
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: