Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AAGTECQNDVE--VLKTTCYKFVEK-----DGPKLQ------PSPDCCTSMKGVNVPCVCTYLGSPGVRDNI-------------NMDKVFYVTKQCGIAIPGNCGGSKV
2LVF Chain:A ((6-106))
---EECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGL-RMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRCP----
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27384 for 458 contacts (-59.8/contact) +
2D Compatibility (PS) -7382 + (NN) 2361 + (LL) 204
1D Compatibility (HY) -4400 + (ID) 700
Total energy: -37301.0 ( -81.44 by residue)
QMean score : 0.223
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: