Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
HPCGRTFLSALIQLVPCRPSVAPF-S----TLPP-----------NGLCCAAIKTL--GQPCLCVLAKG-----PPIV-GV-----DRTLALHLPGKCSANFLP-CN
1W2Q Chain:A ((23-117))
-----------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRC-
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38592 for 359 contacts (-107.5/contact) +
2D Compatibility (PS) -6582 + (NN) -3125 + (LL) 460
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -51239.0 ( -142.73 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: