Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCGQVTSSMTPCMSYLTGG---GS-------------------PTPACCGGVKSLNSMASTPADRKAACGCLKSAAGAMT------N----LNMGNAASLPGKCGISLPYPISTSTDCSKVN
1PSY Chain:A ((25-119))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCM-------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34775 for 469 contacts (-74.1/contact) +
2D Compatibility (PS) -6431 + (NN) -2543 + (LL) 1080
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -46969.0 ( -100.15 by residue)
QMean score : 0.275
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: