Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCGTVVTRLTPCLTYLRSGGA-VAPACCNGVKALNNDAKTTPDRQAACGCLKTASTSISGIQLGNAASLAGKCGVNLPYKISPTIDCSKVK
1AFH Chain:A ((1-93))
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74947 for 757 contacts (-99.0/contact) +
2D Compatibility (PS) -9147 + (NN) 7 + (LL) 0
1D Compatibility (HY) -7600 + (ID) 2400
Total energy: -94087.0 ( -124.29 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: