Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DPLPPCTVIVNQLNPCVPFLTRNVA-TPSQTCCGGVRYLANYSSSKGDRISICQCIEGS-QSMFPLIDFSLISNLPASCSVPITLPKITPTFDCSTV
2RKN Chain:A ((1-74))
-AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------DFACLCGYKNSPWLGSF-GVDPELASALPKQCGLANA-------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55526 for 475 contacts (-116.9/contact) +
2D Compatibility (PS) -7092 + (NN) -1348 + (LL) 344
1D Compatibility (HY) -1600 + (ID) 950
Total energy: -66172.0 ( -139.31 by residue)
QMean score : 0.133
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: