Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSCGEVTSGLAPCLPYLEG---RGP--------------LGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIK--G-I-------DTGKAAGLPGVCGVNIPYKISPSTDCSTVQ
1SM7 Chain:A ((13-101))
-------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36248 for 407 contacts (-89.1/contact) +
2D Compatibility (PS) -6197 + (NN) 166 + (LL) 1284
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -45095.0 ( -110.80 by residue)
QMean score : 0.289
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: