Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------------------------------------VTCSAIQLSPCLGAITSNSAPSTLCCSRIREQKPCLCTYLKNPTLRNYVNSPGAKKVARTCGVPYPKC--
1JI8 Chain:A ((1-111))
MPVKCPGEYQVDGKKVILDEDCFMQNPEDWDEKVAEWLARELEGIQKMTEEHWKLVKYLREYWETFGTCPPIKMVTKETGF------SLEKIYQLFPSGPAHGACKVAGAPKPTGCV
General information:
TITO was launched using:
RESULT:
Template:
1JI8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13610 for 361 contacts (-37.7/contact) +
2D Compatibility (PS) -6256 + (NN) -79 + (LL) 608
1D Compatibility (HY) -400 + (ID) 450
Total energy: -20187.0 ( -55.92 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_1JI8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JI8-query.scw
PDB file :
Tito_Scwrl_1JI8.pdb
: