Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ANPCNPAQLTPCAGPALFGG--AVPPACCAQLRAQQ-GCLCGYARSPNYGSY-IRSPNAARLFAICNLPMP-RCR
2RKN Chain:A ((9-77))
-----QDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC-
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40853 for 378 contacts (-108.1/contact) +
2D Compatibility (PS) -6515 + (NN) -2529 + (LL) 0
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -54847.0 ( -145.10 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: