Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----VTCQVTQLAPCASAISSSSPPSSQCCAKIKEQKPCLCQYMK-NPSLKAYVSSP---------NAKKVANACGVPIPKC-----------------------------------
1PP7 Chain:U ((5-118))
DLEASFTSRLPPEIVAALKRKSSRDPNSRFPRKLHM----LLTYLASNPQLEEEIGLSWISDTEFKMKKKNVALVMGIKLNTLNVNLRDLAFEQLQHDKGGWTQWKRSGFTRNSVFED
General information:
TITO was launched using:
RESULT:
Template:
1PP7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12290 for 379 contacts (-32.4/contact) +
2D Compatibility (PS) -6710 + (NN) -1726 + (LL) 100
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -25026.0 ( -66.03 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_1PP7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PP7-query.scw
PDB file :
Tito_Scwrl_1PP7.pdb
: