Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SVDCTTLVLSMADCLSFVSNDSTSKK----------PEGTCCSGLKTVLGTDAECLCEAFKSSA--QF-G--VVLNVTKALALPSACKIKAPPASNCG
1S6D Chain:A ((20-97))
---------MLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM--------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35491 for 411 contacts (-86.4/contact) +
2D Compatibility (PS) -6453 + (NN) -2335 + (LL) 632
1D Compatibility (HY) -4800 + (ID) 650
Total energy: -49097.0 ( -119.46 by residue)
QMean score : 0.343
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: