Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QVTLCGMTKEGFASCKPSVQT---GVNPL----------PPSYSCCSALEKADLSCLCFFKKNYPKM---LTDNN-I----DPNLAMQLPAKCNMAGSFSCK
1SM7 Chain:A ((14-105))
----------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTCP
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23959 for 448 contacts (-53.5/contact) +
2D Compatibility (PS) -6990 + (NN) 3090 + (LL) 852
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -29457.0 ( -65.75 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: