Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSDCTNVLI---SMSPCLNYITGNSS---------------TPSSQCCTQLASVVRSSPQCLCQVLNGGGSS------LG-I--EVNKTQAIALPGACNVQTPPISSCN
1SM7 Chain:A ((4-105))
--KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI--GTCP
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46627 for 521 contacts (-89.5/contact) +
2D Compatibility (PS) -7331 + (NN) 195 + (LL) 420
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -58243.0 ( -111.79 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: