Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----ATCNPVGLSPCAGAMSGSGPPSKLCCSKLREQKPCLCGYYRDPNLRQYVDSPNAKKVATACDVHVTC-----------------------------------------------
2GNK Chain:A ((1-112))
MKLVTVIIKPFKLEDVREALSSIGIQGL-------TVTEVKGF-----------------GRLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRIRTGEADEAAL
General information:
TITO was launched using:
RESULT:
Template:
2GNK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7051 for 224 contacts (-31.5/contact) +
2D Compatibility (PS) -4673 + (NN) -114 + (LL) 1152
1D Compatibility (HY) -2800 + (ID) 300
Total energy: -13786.0 ( -61.54 by residue)
QMean score : 0.162
(partial model without unconserved sides chains):
PDB file :
Tito_2GNK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GNK-query.scw
PDB file :
Tito_Scwrl_2GNK.pdb
: