Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSSSSCTNVLV---SMSPCLDYIQGNSS---------------KPSSSCCSQLANVVRSQPQCLCEVLNG---GAS---SLG----VSVNQTQAMALPTACNVKTPPASQCNATIL
1SM7 Chain:A ((4-105))
----KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRI-YQIAKNLPNVCNMKQ--IGTCP----
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46652 for 493 contacts (-94.6/contact) +
2D Compatibility (PS) -7303 + (NN) 270 + (LL) 516
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -58019.0 ( -117.69 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: