Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSAAECKQERK--ILVNACKAVITRK-----P---------PTPYCCERLRVTHVSCVCPVITPQLAALI-------DVNYAIKVIQGCGIQVPRHSKCGSITTP
1S6D Chain:A ((10-97))
----GCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45517 for 453 contacts (-100.5/contact) +
2D Compatibility (PS) -6067 + (NN) 1851 + (LL) 636
1D Compatibility (HY) -5600 + (ID) 700
Total energy: -55397.0 ( -122.29 by residue)
QMean score : 0.279
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: