Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVQGQGACNAATLQPCLAASKGT---A----AP-----------TTQCCAAVKNVGGAAGGPQCLCSLTTSALARAN----GV-----NPDAAMAIPQKCGLAVPKGFTCNNKPVPGS
1W2Q Chain:A ((23-112))
----------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME---NTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR---------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28008 for 392 contacts (-71.4/contact) +
2D Compatibility (PS) -6653 + (NN) -2208 + (LL) 460
1D Compatibility (HY) -4400 + (ID) 550
Total energy: -41359.0 ( -105.51 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: