Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACNAMTLQPCLAASQGK---V----AP-----------DPACCTAIKNIGLSADGPQCLCTLATGPLAKA----NG--V---SADAAMAIPKKCGLPVPKGFMCNNKPVPGS
1W2Q Chain:A ((24-112))
-----NLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEM---ENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR---------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27478 for 376 contacts (-73.1/contact) +
2D Compatibility (PS) -6566 + (NN) -3594 + (LL) 404
1D Compatibility (HY) -4800 + (ID) 500
Total energy: -42534.0 ( -113.12 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: