Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPSPNPSCGAQL--SQLGPCARYSVP----PM-PGQALPAPG-------PECCSALGSV--SRDCACGAID---------------------IINSLPAKCGLPRIS-CQ
1W2Q Chain:A ((11-118))
--GDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCD
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32495 for 358 contacts (-90.8/contact) +
2D Compatibility (PS) -7245 + (NN) -5009 + (LL) -20
1D Compatibility (HY) -5600 + (ID) 850
Total energy: -51219.0 ( -143.07 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: