Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GSDCQNDIQM--LETTCYKYVAKD---APTS----------PPSQECCDTMNGVDVPCVCSYLGAPGIKENI------------SMEKVFYVAQQCGVSIPGNCGGSKRA
1SM7 Chain:A ((4-103))
--KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTL-KQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGT-------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39404 for 519 contacts (-75.9/contact) +
2D Compatibility (PS) -7436 + (NN) -18 + (LL) -380
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -49638.0 ( -95.64 by residue)
QMean score : 0.301
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: