Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AMSAAECKEERR--LGIKVCTPVVYGN-D-------------PTPACCERVRVTHVECVCPMITPKLAPLI-------DVDRLVRLIKGCGRKVPRHFKCGGITTP
1S6D Chain:A ((9-97))
----SGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32125 for 463 contacts (-69.4/contact) +
2D Compatibility (PS) -6401 + (NN) 748 + (LL) 740
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -41238.0 ( -89.07 by residue)
QMean score : 0.163
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: