Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPVCPLNRSDLGICVNVLGLISLTT--SNVARCCSILAGLNNTPLVSVCACEAVRLNILNLLGITVNLNLRLNGLLGLCRLPVQPGFNCLL
2RKN Chain:A ((2-77))
IDLCGMSQDELNECKPAVSK---ENPTSPSQPCCTALQHA-DFA----CLCGYKNSPWLGS--FGVDPELA-SALPKQCGLANAP--TC--
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63735 for 501 contacts (-127.2/contact) +
2D Compatibility (PS) -7501 + (NN) 505 + (LL) 1296
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -72685.0 ( -145.08 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: