Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQLPILQVIIPIIASMLCFFTRKHKVSWFISFTTTIVTLFISSVLLIKTYNGETITYHLGNWAPPYGIELRIDVLNSLILTLVNFVALISVLYSFYINEKEISKNKITGLYSLFLLCLSGLLGILVTNDIFNLYVFLEISSLSSYVLVSMGKDKKALVAAFEYLISGTIGATFYL-LGIGLLYSTTGTLNMSDMAERI-VPLYNNN-IVKLGTLFIFVGLSNKM-A--------L-FPLSRWLVNSYSEAPSFVSIFFSGTVTKVMIYVF-----IRIFYTVFHQNF--FLLKLPLSNVII--------ILALCAI-----VFGSI-FAITAKDIRRLFA--HSSVSQIGYIILV--------------LSLNSKIALSAAILHII-NHSIIKTSLFMVAGCISYKFGTTKIENLSGLKKSMPYIAFAFTLLSLALVGVPLTNGFISKWYIINVIIESHARISLIVFVVGSFLALIYMWKAVEKMYFESDAVSCVEMTSGKTDVPFPMLFCPLFMATLTLVVGVYSNPIRLVVEKLVF |
4RGL Chain:A ((8-335)) | -------------------------------------------------------------YQPPYTIT---PAIVNLVAEIGEIIGRYTVLAEQNLTPRLRRENRIRTIQASLAI---------------------ENNTLTLEQVTAVIDGKRVLGHPREIQEVRNAFATYEAMED----WDASVEGDLLAAHELLMRGLVDETGRYRSGGVGIFRGEQLVHMAPPADRVPKLMADLLDWLENT-NEHPLVASCIFHYEFEFIHPFADGNGRMGRLWQTLILRNWKPLLAYLPVETVIRDRQEDYYRVLAVADSQADATPFVEFMLGALRDAVREAVSTDHQVTDQVAALIRAIGGGELSSNDLMQALGLSHRPTFRNNYLNPAMEDEWIERTQPDSPRSPTQRYRLTGKGQR--------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RGL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -230063 for 1867 contacts (-123.2/contact) +
2D Compatibility (PS) -27418 + (NN) 2060 + (LL) 19840
1D Compatibility (HY) -3600 + (ID) 2600
Total energy: -241781.0 ( -129.50 by residue)
QMean score : 0.284
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